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What is a Chronic UTI?

Chronic urinary tract infections (UTIs) may develop from inadequately treated acute UTIs. For instance, when infections test positive but fail to fully resolve following a typical antibiotic regimen (a scenario observed in approximately 25-35 percent of cases), they can progress to chronic UTIs. Additionally, incorrect antibiotic prescriptions, delayed antibiotic initiation, or lack of antibiotic treatment altogether can contribute to the development of chronic UTIs. 

The human bladder contains over 400 bacterial species, most of them living peacefully with us and not causing any symptoms. Trouble occurs when, for one reason or another, pathogenic bacteria get into the mix and generate an inflammatory response from the immune system. The first and most sensitive symptoms that this generates are voiding symptoms such as reduced or intermittent stream and terminal dribbling.

Others symptoms may include pain or urinary urgency. 


Below, you can read about the disease and how cUTI differs from an acute UTI.

Figure 1 illustrates the bladder and urethra in health. The yellow part is the urine and at the bottom of the image there is a drawing of the urothelium (the tissue lining the bladder) which is about five cells deep. We believe that it takes about 100 days for a cell at the base to transit to the top surface. This is near a third of a year.

Figure 1

Illustration of the bladder epithelium

These figures are drawn from experiments conducted on (1) mouse models of chronic cystitis and (2) more recent work done in laboratories (conducted by Professor James Malone-Lee) using human bladder cells, or (3) our living culture of a human urothelium. The images are cartoons and the interpretation is a simplified analysis of a very complex situation. All research/images below are written by the late Professor James Malone-Lee.

Figure 2

Illustration of the bladder epithelium seen with free-floating bacteria in the urine

Figure 2 illustrates the circumstances during the early phase of a urinary infection. Note that the normal bladder is not sterile and contains at least 400 different species of bacteria so this is an idealised picture. We have shown bacteria called bacilli swimming in the urine. You will see that the urothelium is the same as before. It is probable that the normal bladder has plenty of microbes swimming around in the urine but they are in comfortable balance with the body and not causing symptoms.

In figure 3 there are changes in the urothelium.

They have penetrated down to the base of the urothelium and in some cases they have entered the cells. This is called intracellular colonisation. In the mouse model we have found that if the infection is treated aggressively in the first 14 days, then this intracellular colonisation will not occur. We suspect that this might be the case in the human and so we advocate very early and aggressive treatment of acute urinary infection until all symptoms have cleared. The microbes that have entered the cells will go into a dormant state similar to hibernation and so they will not divide. If microbes do not divide they will not be affected by antibiotics.

They can live in these cells for long periods of time and renew their situation by moving to fresh cells. We call them “persisters”. This is a most important matter; the microbes inside the cells will not be affected by antibiotic attack until they start dividing, so by remaining dormant they survive short-lived antibiotic attacks. This is why assaults with powerful broad-spectrum agents or intravenous treatments are so disappointing. These methods produce early gratifying results by killing off large numbers of dividing microbes but once they are stopped the dormant microbes awake and invade the spaces cleared by the powerful agents.

A single dormant microbe, woken from slumber, can become 1 million microbes before sundown. Notice also that the GAG layer, a protein cap on the surface cells, has nothing to do with intracellular colonisation, so treatments designed to replace the GAG layer do not make much sense.

Figure 3

Illustration of the bladder epithelium with bacteria that have started to invade it

Figure 4

Illustration of the immune response to the invasion of the bladder epithelium by bacteria

In figure 4 the situation seems to be getting more complicated. The cells that have become colonised have been transmitting distress signals to the immune system. This has resulted in an inflammatory response.


If you look carefully you will see that the blood vessels have dilated up and this will cause the bladder wall to look red or inflamed. Some of these blood vessels might burst and leak blood into the urine which will be detected on dipstick analysis or microscopy.  Just because the bladder looks red it does not imply a diagnosis of interstitial cystitis. If the inflamed bladder tends to bleed spontaneously then it should be no surprise to see bleeding patches appear when the bladder is distended. It is claimed that this implies a diagnosis of interstitial cystitis – it does no such thing, it just illustrates the presence of inflammation.


The inflammatory response will also involve the infiltration of the urothelium with white blood cells (aka pus cells, leucocytes, neutrophils, polymorphs, inflammatory cells). These are attracted by chemicals called cytokines which are released by the parasitised cells. When the white cells arrive they fail to detect a problem because the microbes are hiding inside the cells.


The white cells declare no problem and the urothelial cells disagree. This leads to a standoff and results in a chronic inflammatory response that does not achieve very much other than cause pain and white blood cells in the urine. This situation is responsible for the chronic low-grade symptoms that patients describe and which may persist despite apparently normal urinalysis. If the reaction is low-grade white cells are less likely to leak into the urine. A culture is unlikely to find the problem because the pathological microbes are imprisoned inside the urothelial cells and are not in the urine, which is collected for culture.

Figure 5 illustrates a further stage in the evolution of the persisting inflammation. The urothelium thickens. All epithelial tissue will thicken, through a process called metaplasia, when stressed in any way. The skin of the feet shows this through the formation of corns caused by poorly fitting shoes. The purpose of the thickening is an attempt to form a protective barrier; but it is not very effective since the offending microbes are inside the cells. Given this occurrence, it will take longer for a cell at the base to reach the surface.

Figure 5

Illustration of the thickening, or metaplasia, of the uroepithelium in response to infection

Figure 6

Illustration of biofilms in the bladder

Figures 6 introduces another phenomenon, which is the formation of biofilms. The human body is covered in biofilms. Wherever there is a surface, biofilms will form. Our skin, eyes, intestines and bladder are covered in biofilms and we are discovering more inside the body. Biofilm formation is not a disease process. However, if a pathological microbe gets into a biofilm two properties come into play: (1) the microbes cease to divide and therefore become unsusceptible to antibiotic attack. (2) they become attached to the cells either inside or outside. Thus these biofilms can harbour dormant pathogens with the ability to break out, divide and set up fresh infection. It is best to think of the intracellular microbes and the biofilms as one pathological state involving the parasitisation of the cells.

Figure 7

Illustration of the bladder epithelium shedding its cells in response to bacterial invasion

Figure 7 shows the crux of the matter. The body’s innate immune system responds to the cellular infection by shedding the cells and this is a most effective way of clearing the problem. However, the microbes have evolved to detect the fact that they are inside a free floating cell that is dying and on its way to the sewer.


The bug must escape and does so by waking up, dividing vigorously to create a microbial swarm that then bursts out of the cell into the urine. Continued division causes many more microbes to form what we call a “planktonic flare” which can lead to an acute cystitis, but it will also result in colonisation of healthy fresh cells at the base of urothelium.


Thus, the parasitisation process is reproduced. When we treat, we depend heavily on the innate immune shedding of cells and support this process by using antibiotics and antiseptics to attack any microbes that escape from the cells. From time to time, a microbial swarm may overwhelm this support and an acute flare develops despite treatment being in place. In those circumstances we rescue the situation by increasing the dose of the regimen on the principle that higher concentrations will overcome the increased microbial load. We must maintain the treatment regimen until all the parasitised cells have been cleared and that takes time.

In Figure 8, we focus on the persister microbes dormant in the cells of the bladder wall. For clarity we have left out several other features of a chronic infection. Over to the left we start with a single microbe, dormant inside a cell. We call this a persister. For some reason this
microbe may wake up and start dividing and this is shown in stages as you move to the right. As the cell fills with dividing microbes it becomes damaged and dividing microbes leak out into the tissue spaces. This will cause an acute flare. Eventually the cell perishes, and the microbes continue to divide through the tissue spaces and if they are given the chance they will set up new, dormant persisters inside fresh cells. Whilst the microbes are dividing, they will be particularly susceptible to antibiotic attack and therefore we increase doses during an acute flare.


We seek to achieve the highest concentrations of antibiotic in the tissues that we can. This diagram explains why short-lived courses of powerful antibiotic can induce a gratifying immediate response only for the symptoms to return in a few weeks. The short
antibiotic course does nothing to the root of the problem which is the existence of dormant persister microbes that are really behaving like seeds waiting for the right moment to break out again

Figure 8


In figure 9 we put it all together. It is worth spending time studying this and absorbing the information that is there. Always remember that these images are cartoons. If we showed you the photomicrographs from our laboratory series, it would be very difficult to appreciate the patterns. We must use special stains and different light filters to make sense of the complexity.

Figure 9

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